Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: UYK51713.1 RPB2 [Rhopalogaster transversarius] ... Query length: 237 aa

DNA-directed RNA polymerase II core subunit RPB2 ...

DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]

1224 aa protein

accession:NP_014794.3

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II complex subunit Rpb2 ...

DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]

1210 aa protein

accession:NP_593101.2

Alignment Sequence Identical proteins

Query: RPB2 ...

RPB2 [Rhopalogaster transversarius]

237 aa protein

accession:UYK51713.1

Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]

1194 aa protein

accession:NP_498047.2

Alignment Sequence Identical proteins

RNA polymerase II subunit B, isoform B ...

RNA polymerase II subunit B, isoform B [Drosophila melanogaster]

1176 aa protein

accession:NP_001287323.1

Alignment Sequence Identical proteins

RNA polymerase II core subunit ...

RNA polymerase II core subunit [Dictyostelium discoideum AX4]

1170 aa protein

accession:XP_636812.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_593101.2\|	DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]	313	313	100%	3e-98	62.80%	NP_593101.2
2 Select seq ref\|NP_014794.3\|	DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]	292	292	100%	8e-91	58.00%	NP_014794.3
3 Select seq ref\|NP_498047.2\|	DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]	277	277	100%	3e-85	58.58%	NP_498047.2
4 Select seq ref\|NP_001287323.1\|	RNA polymerase II subunit B, isoform B [Drosophila melanogaster]	272	272	100%	1e-83	57.32%	NP_001287323.1
5 Select seq ref\|XP_636812.1\|	RNA polymerase II core subunit [Dictyostelium discoideum AX4]	256	256	100%	1e-77	56.07%	XP_636812.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments