Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
WDE40368.1
MHC class II antigen [Homo sapiens]
...
Query length:
254 aa
DOMAINS: and other(s) domains
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RT1 class Ia, locus A2 isoform X5
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RT1 class Ia, locus A2 isoform X5 [Rattus norvegicus]
355 aa protein
accession:XP_063135039.1
major histocompatibility complex class II DAA precursor
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major histocompatibility complex class II DAA precursor [Danio rerio]
236 aa protein
accession:NP_001004521.3
class II histocompatibility antigen, M alpha chain precursor
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class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
DOMAINS: and other(s) domains
...
RT1 class Ia, locus A2 isoform X5 [Rattus norvegicus]
355 aa protein
accession:XP_063135039.1
major histocompatibility complex class II DAA precursor [Danio rerio]
236 aa protein
accession:NP_001004521.3
class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 504 | 504 | 100% | 0.0 | 96.47% | XP_054187296.1 | |
| 2 | 100 | 100 | 76% | 2e-24 | 35.68% | NP_001004521.3 | |
| 3 | 89.4 | 89.4 | 78% | 3e-20 | 27.80% | NP_001411717.1 | |
| 4 | 63.2 | 63.2 | 43% | 1e-10 | 31.53% | XP_063135039.1 | |
| 5 | 501 | 501 | 100% | 0.0 | 96.08% | XP_054186783.1 |