Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: WP_016900322.1 type II secretion system secretin GspD [Pseudoalteromonas] ... Query length: 688 aa

type IV pilus secretin PilQ ...

type IV pilus secretin PilQ [Neisseria meningitidis]

769 aa protein

accession:WP_002261352.1

Alignment Sequence Identical proteins

GspD family T2SS secretin variant XcpQ ...

GspD family T2SS secretin variant XcpQ [Pseudomonas aeruginosa]

658 aa protein

accession:WP_003113934.1

Alignment Sequence Identical proteins

type II secretion system secretin GspD ...

type II secretion system secretin GspD [Pseudomonas]

776 aa protein

accession:WP_003106682.1

Alignment Sequence Identical proteins

type II secretion system secretin GspD ...

type II secretion system secretin GspD [Escherichia coli]

585 aa protein

accession:WP_001358887.1

Alignment Sequence Identical proteins

Query: type II secretion system secretin GspD ...

type II secretion system secretin GspD [Pseudoalteromonas]

688 aa protein

accession:WP_016900322.1

Sequence Identical proteins

type II secretion system secretin GspD ...

type II secretion system secretin GspD [Shewanella oneidensis]

704 aa protein

accession:WP_011070563.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_011070563.1\|	type II secretion system secretin GspD [Shewanella oneidensis]	720	720	97%	0.0	55.11%	WP_011070563.1
2 Select seq ref\|WP_001358887.1\|	type II secretion system secretin GspD [Escherichia coli]	474	474	82%	7e-159	44.35%	WP_001358887.1
3 Select seq ref\|WP_003113934.1\|	GspD family T2SS secretin variant XcpQ [Pseudomonas aeruginosa]	348	348	87%	2e-109	36.91%	WP_003113934.1
4 Select seq ref\|WP_003106682.1\|	type II secretion system secretin GspD [Pseudomonas]	336	336	87%	3e-103	35.61%	WP_003106682.1
5 Select seq ref\|WP_002261352.1\|	type IV pilus secretin PilQ [Neisseria meningitidis]	98.6	98.6	53%	7e-20	25.34%	WP_002261352.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments