Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: WP_311510520.1 type II CAAX prenyl endopeptidase Rce1 family protein [Nocardiopsis sp. DSM 44743] ... Query length: 728 aa

Query: type II CAAX prenyl endopeptidase Rce1 family protein ...

type II CAAX prenyl endopeptidase Rce1 family protein [Nocardiopsis sp. DSM 44743]

728 aa protein

accession:WP_311510520.1

Sequence Identical proteins

collagen alpha-5(VI) chain isoform 1 precursor ...

collagen alpha-5(VI) chain isoform 1 precursor [Homo sapiens]

2614 aa protein

accession:NP_001265227.1

Alignment Sequence Identical proteins

collagen alpha-5(VI) chain isoform 2 precursor ...

collagen alpha-5(VI) chain isoform 2 precursor [Homo sapiens]

2526 aa protein

accession:NP_694996.5

Alignment Sequence Identical proteins

collagen alpha-5(VI) chain isoform X1 ...

collagen alpha-5(VI) chain isoform X1 [Mus musculus]

2691 aa protein

accession:XP_030100352.2

Alignment Sequence Identical proteins

collagen alpha-5(VI) chain precursor ...

collagen alpha-5(VI) chain precursor [Mus musculus]

2640 aa protein

accession:NP_001161395.1

Alignment Sequence Identical proteins

collagen alpha-6(VI) chain ...

collagen alpha-6(VI) chain [Danio rerio]

2574 aa protein

accession:XP_068070384.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001265227.1\|	collagen alpha-5(VI) chain isoform 1 precursor [Homo sapiens]	56.2	56.2	26%	2e-06	28.64%	NP_001265227.1
2 Select seq ref\|XP_030100352.2\|	collagen alpha-5(VI) chain isoform X1 [Mus musculus]	48.1	48.1	25%	5e-04	28.64%	XP_030100352.2
3 Select seq ref\|XP_068070384.1\|	collagen alpha-6(VI) chain [Danio rerio]	40.0	40.0	14%	0.12	34.26%	XP_068070384.1
4 Select seq ref\|NP_694996.5\|	collagen alpha-5(VI) chain isoform 2 precursor [Homo sapiens]	55.8	55.8	26%	2e-06	28.64%	NP_694996.5
5 Select seq ref\|NP_001161395.1\|	collagen alpha-5(VI) chain precursor [Mus musculus]	47.8	47.8	25%	5e-04	28.64%	NP_001161395.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments