Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XCD09761.1
RNA polymerase II second largest subunit [Funalia rigida]
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Query length:
190 aa
DOMAINS: and other(s) domains
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Query: RNA polymerase II second largest subunit
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RNA polymerase II second largest subunit [Funalia rigida]
190 aa protein
accession:XCD09761.1
DNA-directed RNA polymerase II complex large subunit Rpb1
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DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
DNA-directed RNA polymerase II subunit RPB1-like
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DNA-directed RNA polymerase II subunit RPB1-like [Glycine max]
1790 aa protein
accession:XP_040861151.1
DNA-directed RNA polymerase II subunit RPB1
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DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
1970 aa protein
accession:NP_001277997.1
DNA-directed RNA polymerase II subunit RPB1
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DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
1970 aa protein
accession:NP_000928.1
DNA-directed RNA polymerase II subunit RPB1
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DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
1965 aa protein
accession:XP_005156282.1
DOMAINS: and other(s) domains
...
RNA polymerase II second largest subunit [Funalia rigida]
190 aa protein
accession:XCD09761.1
DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
DNA-directed RNA polymerase II subunit RPB1-like [Glycine max]
1790 aa protein
accession:XP_040861151.1
DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
1970 aa protein
accession:NP_001277997.1
DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
1970 aa protein
accession:NP_000928.1
DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
1965 aa protein
accession:XP_005156282.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 190 | 190 | 100% | 8e-55 | 57.07% | NP_595673.1 | |
| 2 | 149 | 149 | 94% | 1e-40 | 42.86% | XP_040861151.1 | |
| 3 | 145 | 145 | 92% | 5e-39 | 42.86% | NP_001277997.1 | |
| 4 | 145 | 145 | 92% | 5e-39 | 42.86% | NP_000928.1 | |
| 5 | 143 | 143 | 92% | 2e-38 | 41.99% | XP_005156282.1 |