Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XII39697.1
MHC class II antigen [Sylvia atricapilla]
...
Query length:
134 aa
DOMAINS: and other(s) domains
...
major histocompatibility complex class II DAA precursor
...
major histocompatibility complex class II DAA precursor [Danio rerio]
236 aa protein
accession:NP_001004521.3
histocompatibility 2, class II antigen A, alpha precursor
...
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1 [Homo sapiens]
206 aa protein
accession:XP_006715142.1
Query: MHC class II antigen
...
MHC class II antigen [Sylvia atricapilla]
134 aa protein
accession:XII39697.1
HLA class II histocompatibility antigen, DR alpha chain precursor
...
HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
RT1 class II, locus Da precursor
...
RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
DOMAINS: and other(s) domains
...
major histocompatibility complex class II DAA precursor [Danio rerio]
236 aa protein
accession:NP_001004521.3
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1 [Homo sapiens]
206 aa protein
accession:XP_006715142.1
MHC class II antigen [Sylvia atricapilla]
134 aa protein
accession:XII39697.1
HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 151 | 151 | 91% | 2e-45 | 59.20% | NP_061984.2 | |
| 2 | 151 | 151 | 90% | 2e-45 | 60.16% | NP_001008847.1 | |
| 3 | 128 | 128 | 93% | 3e-36 | 48.03% | NP_034508.2 | |
| 4 | 75.1 | 75.1 | 95% | 5e-16 | 31.82% | NP_001004521.3 | |
| 5 | 122 | 122 | 93% | 1e-34 | 48.03% | XP_006715142.1 |