Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_006501406.1
nonsense-mediated mRNA decay factor SMG5 isoform X1 [Mus musculus]
...
Query length:
1003 aa
DOMAINS: and other(s) domains
...
Smg5 nonsense mediated mRNA decay factor, isoform C
...
Smg5 nonsense mediated mRNA decay factor, isoform C [Drosophila melanogaster]
1177 aa protein
accession:NP_001285914.1
Query: nonsense-mediated mRNA decay factor SMG5 isoform X1
...
nonsense-mediated mRNA decay factor SMG5 isoform X1 [Mus musculus]
1003 aa protein
accession:XP_006501406.1
protein SMG7-like
...
protein SMG7-like [Glycine max]
957 aa protein
accession:XP_040865305.1
telomerase-binding protein EST1A precursor
...
telomerase-binding protein EST1A precursor [Danio rerio]
1562 aa protein
accession:NP_001410781.1
nonsense-mediated mRNA decay factor SMG7 isoform 3
...
nonsense-mediated mRNA decay factor SMG7 isoform 3 [Rattus norvegicus]
1212 aa protein
accession:NP_001402669.1
nonsense-mediated mRNA decay factor SMG7 isoform X1
...
nonsense-mediated mRNA decay factor SMG7 isoform X1 [Homo sapiens]
1216 aa protein
accession:XP_047291697.1
DOMAINS: and other(s) domains
...
Smg5 nonsense mediated mRNA decay factor, isoform C [Drosophila melanogaster]
1177 aa protein
accession:NP_001285914.1
nonsense-mediated mRNA decay factor SMG5 isoform X1 [Mus musculus]
1003 aa protein
accession:XP_006501406.1
protein SMG7-like [Glycine max]
957 aa protein
accession:XP_040865305.1
telomerase-binding protein EST1A precursor [Danio rerio]
1562 aa protein
accession:NP_001410781.1
nonsense-mediated mRNA decay factor SMG7 isoform 3 [Rattus norvegicus]
1212 aa protein
accession:NP_001402669.1
nonsense-mediated mRNA decay factor SMG7 isoform X1 [Homo sapiens]
1216 aa protein
accession:XP_047291697.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 85.1 | 226 | 74% | 1e-15 | 33.96% | NP_001285914.1 | |
| 2 | 83.6 | 83.6 | 16% | 3e-15 | 32.53% | XP_040865305.1 | |
| 3 | 78.2 | 78.2 | 25% | 2e-13 | 25.78% | NP_001402669.1 | |
| 4 | 76.3 | 76.3 | 22% | 6e-13 | 27.12% | XP_047291697.1 | |
| 5 | 68.2 | 120 | 44% | 2e-10 | 26.92% | NP_001410781.1 |