Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_006512270.1 exosome complex exonuclease RRP42 isoform X1 [Mus musculus] ... Query length: 213 aa

Ribosomal RNA-processing protein 42 ...

Ribosomal RNA-processing protein 42 [Caenorhabditis elegans]

312 aa protein

accession:NP_001370048.1

Alignment Sequence Identical proteins

exosome complex protein Rrp42 ...

exosome complex protein Rrp42 [Sulfolobus acidocaldarius]

276 aa protein

accession:WP_011277503.1

Alignment Sequence Identical proteins

exosome complex protein Rrp42 ...

exosome complex protein Rrp42 [Methanothermobacter]

271 aa protein

accession:WP_010876321.1

Alignment Sequence Identical proteins

exosome complex component RRP42 isoform X1 ...

exosome complex component RRP42 isoform X1 [Rattus norvegicus]

333 aa protein

accession:XP_063121733.1

Alignment Sequence Identical proteins

Query: exosome complex exonuclease RRP42 isoform X1 ...

exosome complex exonuclease RRP42 isoform X1 [Mus musculus]

213 aa protein

accession:XP_006512270.1

Sequence Identical proteins

exosome complex exonuclease RRP42 isoform 3 ...

exosome complex exonuclease RRP42 isoform 3 [Mus musculus]

226 aa protein

accession:NP_001405791.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001405791.1\|	exosome complex exonuclease RRP42 isoform 3 [Mus musculus]	417	417	96%	6e-150	100.00%	NP_001405791.1
2 Select seq ref\|XP_063121733.1\|	exosome complex component RRP42 isoform X1 [Rattus norvegicus]	348	348	80%	4e-121	99.42%	XP_063121733.1
3 Select seq ref\|WP_011277503.1\|	exosome complex protein Rrp42 [Sulfolobus acidocaldarius]	90.1	90.1	79%	7e-21	34.88%	WP_011277503.1
4 Select seq ref\|NP_001370048.1\|	Ribosomal RNA-processing protein 42 [Caenorhabditis elegans]	84.7	84.7	96%	1e-18	30.21%	NP_001370048.1
5 Select seq ref\|WP_010876321.1\|	exosome complex protein Rrp42 [Methanothermobacter]	72.8	72.8	74%	1e-14	32.70%	WP_010876321.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments