Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_011245398.1
RNA polymerase II subunit A C-terminal domain phosphatase isoform X2 [Mus musculus]
...
Query length:
841 aa
DOMAINS: and other(s) domains
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RNA polymerase II CTD phosphatase Fcp1
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RNA polymerase II CTD phosphatase Fcp1 [Schizosaccharomyces pombe]
723 aa protein
accession:NP_594768.1
TFIIF-interacting CTD phosphatase, isoform B
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TFIIF-interacting CTD phosphatase, isoform B [Drosophila melanogaster]
880 aa protein
accession:NP_001286846.1
RNA polymerase II subunit A C-terminal domain phosphatase isoform X1
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RNA polymerase II subunit A C-terminal domain phosphatase isoform X1 [Danio rerio]
915 aa protein
accession:XP_068071217.1
RNA polymerase II subunit A C-terminal domain phosphatase isoform 1
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RNA polymerase II subunit A C-terminal domain phosphatase isoform 1 [Homo sapiens]
961 aa protein
accession:NP_004706.3
Query: RNA polymerase II subunit A C-terminal domain phosphatase isoform X2
...
RNA polymerase II subunit A C-terminal domain phosphatase isoform X2 [Mus musculus]
841 aa protein
accession:XP_011245398.1
RNA polymerase II subunit A C-terminal domain phosphatase
...
RNA polymerase II subunit A C-terminal domain phosphatase [Rattus norvegicus]
973 aa protein
accession:NP_001401324.1
DOMAINS: and other(s) domains
...
RNA polymerase II CTD phosphatase Fcp1 [Schizosaccharomyces pombe]
723 aa protein
accession:NP_594768.1
TFIIF-interacting CTD phosphatase, isoform B [Drosophila melanogaster]
880 aa protein
accession:NP_001286846.1
RNA polymerase II subunit A C-terminal domain phosphatase isoform X1 [Danio rerio]
915 aa protein
accession:XP_068071217.1
RNA polymerase II subunit A C-terminal domain phosphatase isoform 1 [Homo sapiens]
961 aa protein
accession:NP_004706.3
RNA polymerase II subunit A C-terminal domain phosphatase isoform X2 [Mus musculus]
841 aa protein
accession:XP_011245398.1
RNA polymerase II subunit A C-terminal domain phosphatase [Rattus norvegicus]
973 aa protein
accession:NP_001401324.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1506 | 1506 | 100% | 0.0 | 89.51% | NP_001401324.1 | |
| 2 | 1192 | 1192 | 100% | 0.0 | 76.05% | NP_004706.3 | |
| 3 | 849 | 849 | 88% | 0.0 | 60.90% | XP_068071217.1 | |
| 4 | 261 | 392 | 56% | 8e-74 | 59.53% | NP_001286846.1 | |
| 5 | 171 | 238 | 42% | 1e-43 | 40.52% | NP_594768.1 |