Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_011535620.1 ribosome quality control complex subunit NEMF isoform X4 [Homo sapiens] ... Query length: 544 aa

hypothetical protein, conserved ...

hypothetical protein, conserved [Leishmania donovani]

1228 aa protein

accession:XP_003858778.1

Alignment Sequence Identical proteins

ribosome quality control complex subunit Rqc2 ...

ribosome quality control complex subunit Rqc2 [Schizosaccharomyces pombe]

1021 aa protein

accession:NP_588145.2

Alignment Sequence Identical proteins

Rqc2p ...

Rqc2p [Saccharomyces cerevisiae S288C]

1038 aa protein

accession:NP_015316.1

Alignment Sequence Identical proteins

conserved protein, unknown function ...

conserved protein, unknown function [Plasmodium falciparum 3D7]

2180 aa protein

accession:XP_024329146.1

Alignment Sequence Identical proteins

Query: ribosome quality control complex subunit NEMF isoform X4 ...

ribosome quality control complex subunit NEMF isoform X4 [Homo sapiens]

544 aa protein

accession:XP_011535620.1

Sequence Identical proteins

ribosome quality control complex subunit NEMF isoform X1 ...

ribosome quality control complex subunit NEMF isoform X1 [Homo sapiens]

993 aa protein

accession:XP_047287867.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047287867.1\|	ribosome quality control complex subunit NEMF isoform X1 [Homo sapiens]	1075	1075	99%	0.0	97.43%	XP_047287867.1
2 Select seq ref\|NP_588145.2\|	ribosome quality control complex subunit Rqc2 [Schizosaccharomyces pombe]	267	267	96%	4e-78	33.79%	NP_588145.2
3 Select seq ref\|NP_015316.1\|	Rqc2p [Saccharomyces cerevisiae S288C]	190	190	93%	9e-51	29.08%	NP_015316.1
4 Select seq ref\|XP_024329146.1\|	conserved protein, unknown function [Plasmodium falciparum 3D7]	144	144	37%	4e-35	37.07%	XP_024329146.1
5 Select seq ref\|XP_003858778.1\|	hypothetical protein, conserved [Leishmania donovani]	136	241	83%	9e-33	40.76%	XP_003858778.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments