Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_014708040.1 CCR4-NOT transcription complex subunit 9 isoform X2 [Equus asinus] ... Query length: 255 aa

CCR4-NOT core subunit CAF40 ...

CCR4-NOT core subunit CAF40 [Saccharomyces cerevisiae S288C]

373 aa protein

accession:NP_014111.1

Alignment Sequence Identical proteins

CCR4-NOT complex subunit Rcd1 ...

CCR4-NOT complex subunit Rcd1 [Schizosaccharomyces pombe]

283 aa protein

accession:NP_594984.1

Alignment Sequence Identical proteins

protein CAF40, putative ...

protein CAF40, putative [Plasmodium falciparum 3D7]

652 aa protein

accession:XP_001351634.1

Alignment Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 ...

CCR4-NOT transcription complex subunit 9 [Caenorhabditis elegans]

330 aa protein

accession:NP_001309488.1

Alignment Sequence Identical proteins

Query: CCR4-NOT transcription complex subunit 9 isoform X2 ...

CCR4-NOT transcription complex subunit 9 isoform X2 [Equus asinus]

255 aa protein

accession:XP_014708040.1

Sequence Identical proteins

CCR4-NOT transcription complex subunit 9 isoform X2 ...

CCR4-NOT transcription complex subunit 9 isoform X2 [Homo sapiens]

205 aa protein

accession:XP_047302228.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047302228.1\|	CCR4-NOT transcription complex subunit 9 isoform X2 [Homo sapiens]	361	361	69%	4e-127	99.44%	XP_047302228.1
2 Select seq ref\|NP_001309488.1\|	CCR4-NOT transcription complex subunit 9 [Caenorhabditis elegans]	361	361	93%	2e-125	73.97%	NP_001309488.1
3 Select seq ref\|NP_594984.1\|	CCR4-NOT complex subunit Rcd1 [Schizosaccharomyces pombe]	336	336	88%	4e-116	71.24%	NP_594984.1
4 Select seq ref\|XP_001351634.1\|	protein CAF40, putative [Plasmodium falciparum 3D7]	337	337	89%	1e-111	70.93%	XP_001351634.1
5 Select seq ref\|NP_014111.1\|	CCR4-NOT core subunit CAF40 [Saccharomyces cerevisiae S288C]	298	298	90%	6e-100	63.20%	NP_014111.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments