Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_016877250.1 ribosome quality control complex subunit NEMF isoform X2 [Homo sapiens] ... Query length: 847 aa

ribosome rescue protein RqcH ...

ribosome rescue protein RqcH [Methanothermobacter]

652 aa protein

accession:WP_048061171.1

Alignment Sequence Identical proteins

ribosome quality control complex subunit Rqc2 ...

ribosome quality control complex subunit Rqc2 [Schizosaccharomyces pombe]

1021 aa protein

accession:NP_588145.2

Alignment Sequence Identical proteins

Rqc2p ...

Rqc2p [Saccharomyces cerevisiae S288C]

1038 aa protein

accession:NP_015316.1

Alignment Sequence Identical proteins

conserved protein, unknown function ...

conserved protein, unknown function [Plasmodium falciparum 3D7]

2180 aa protein

accession:XP_024329146.1

Alignment Sequence Identical proteins

Query: ribosome quality control complex subunit NEMF isoform X2 ...

ribosome quality control complex subunit NEMF isoform X2 [Homo sapiens]

847 aa protein

accession:XP_016877250.1

Sequence Identical proteins

ribosome quality control complex subunit NEMF isoform X1 ...

ribosome quality control complex subunit NEMF isoform X1 [Homo sapiens]

993 aa protein

accession:XP_047287867.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047287867.1\|	ribosome quality control complex subunit NEMF isoform X1 [Homo sapiens]	1482	1482	85%	0.0	99.59%	XP_047287867.1
2 Select seq ref\|NP_588145.2\|	ribosome quality control complex subunit Rqc2 [Schizosaccharomyces pombe]	316	378	66%	1e-92	39.01%	NP_588145.2
3 Select seq ref\|XP_024329146.1\|	conserved protein, unknown function [Plasmodium falciparum 3D7]	300	373	66%	7e-85	40.69%	XP_024329146.1
4 Select seq ref\|NP_015316.1\|	Rqc2p [Saccharomyces cerevisiae S288C]	221	279	73%	3e-59	32.03%	NP_015316.1
5 Select seq ref\|WP_048061171.1\|	ribosome rescue protein RqcH [Methanothermobacter]	176	176	46%	1e-45	32.18%	WP_048061171.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments