Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_019072896.1
DNA-directed RNA polymerase IV subunit 1 isoform X4 [Vitis vinifera]
...
Query length:
1243 aa
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase II subunit RPB1
...
DNA-directed RNA polymerase II subunit RPB1 [Caenorhabditis elegans]
1856 aa protein
accession:NP_500523.4
RNA polymerase II subunit A
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RNA polymerase II subunit A [Drosophila melanogaster]
1887 aa protein
accession:NP_511124.1
DNA-directed RNA polymerase II complex large subunit Rpb1
...
DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
nuclear RNA polymerase D1A
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nuclear RNA polymerase D1A [Arabidopsis thaliana]
1453 aa protein
accession:NP_001185298.1
Query: DNA-directed RNA polymerase IV subunit 1 isoform X4
...
DNA-directed RNA polymerase IV subunit 1 isoform X4 [Vitis vinifera]
1243 aa protein
accession:XP_019072896.1
DNA-directed RNA polymerase IV subunit 1 isoform X1
...
DNA-directed RNA polymerase IV subunit 1 isoform X1 [Glycine max]
1455 aa protein
accession:XP_014619267.1
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase II subunit RPB1 [Caenorhabditis elegans]
1856 aa protein
accession:NP_500523.4
RNA polymerase II subunit A [Drosophila melanogaster]
1887 aa protein
accession:NP_511124.1
DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
nuclear RNA polymerase D1A [Arabidopsis thaliana]
1453 aa protein
accession:NP_001185298.1
DNA-directed RNA polymerase IV subunit 1 isoform X4 [Vitis vinifera]
1243 aa protein
accession:XP_019072896.1
DNA-directed RNA polymerase IV subunit 1 isoform X1 [Glycine max]
1455 aa protein
accession:XP_014619267.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1533 | 1533 | 99% | 0.0 | 61.28% | XP_014619267.1 | |
| 2 | 1366 | 1366 | 99% | 0.0 | 54.73% | NP_001185298.1 | |
| 3 | 221 | 221 | 68% | 7e-57 | 24.92% | NP_500523.4 | |
| 4 | 203 | 203 | 65% | 3e-51 | 25.53% | NP_511124.1 | |
| 5 | 201 | 253 | 55% | 9e-51 | 26.76% | NP_595673.1 |