Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_028687783.1 syndecan-1 isoform X1 [Macaca mulatta] ... Query length: 310 aa

syndecan, isoform B ...

syndecan, isoform B [Drosophila melanogaster]

226 aa protein

accession:NP_726071.1

Alignment Sequence Identical proteins

syndecan-3 ...

syndecan-3 [Danio rerio]

402 aa protein

accession:XP_001919756.7

Alignment Sequence Identical proteins

syndecan-3 isoform X3 ...

syndecan-3 isoform X3 [Homo sapiens]

400 aa protein

accession:XP_011540768.1

Alignment Sequence Identical proteins

syndecan-3 precursor ...

syndecan-3 precursor [Rattus norvegicus]

442 aa protein

accession:NP_446345.3

Alignment Sequence Identical proteins

Query: syndecan-1 isoform X1 ...

syndecan-1 isoform X1 [Macaca mulatta]

310 aa protein

accession:XP_028687783.1

Sequence Identical proteins

syndecan-1 precursor ...

syndecan-1 precursor [Mus musculus]

311 aa protein

accession:NP_035649.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_035649.1\|	syndecan-1 precursor [Mus musculus]	409	409	100%	3e-143	75.64%	NP_035649.1
2 Select seq ref\|XP_001919756.7\|	syndecan-3 [Danio rerio]	98.2	98.2	27%	1e-21	57.30%	XP_001919756.7
3 Select seq ref\|XP_011540768.1\|	syndecan-3 isoform X3 [Homo sapiens]	78.2	78.2	24%	9e-15	59.49%	XP_011540768.1
4 Select seq ref\|NP_446345.3\|	syndecan-3 precursor [Rattus norvegicus]	76.3	76.3	24%	4e-14	59.49%	NP_446345.3
5 Select seq ref\|NP_726071.1\|	syndecan, isoform B [Drosophila melanogaster]	70.1	70.1	19%	1e-12	48.33%	NP_726071.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments