Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: XP_030225226.1 collagen alpha-1(XXVIII) chain-like [Gadus morhua] ... Query length: 1161 aa

collagen alpha-4(VI) chain isoform X1 ...

collagen alpha-4(VI) chain isoform X1 [Mus musculus]

2309 aa protein

accession:XP_036011120.1

Alignment Sequence Identical proteins

collagen alpha-1(XXVIII) chain isoform X5 ...

collagen alpha-1(XXVIII) chain isoform X5 [Homo sapiens]

680 aa protein

accession:XP_047276270.1

Alignment Sequence Identical proteins

collagen alpha-1(XXIV) chain isoform X1 ...

collagen alpha-1(XXIV) chain isoform X1 [Rattus norvegicus]

1731 aa protein

accession:XP_063138993.1

Alignment Sequence Identical proteins

collagen, type XXVIII, alpha 1a precursor ...

collagen, type XXVIII, alpha 1a precursor [Danio rerio]

1170 aa protein

accession:NP_001334976.1

Alignment Sequence Identical proteins

Query: collagen alpha-1(XXVIII) chain-like ...

collagen alpha-1(XXVIII) chain-like [Gadus morhua]

1161 aa protein

accession:XP_030225226.1

Sequence Identical proteins

collagen, type XXVIII, alpha 1b precursor ...

collagen, type XXVIII, alpha 1b precursor [Danio rerio]

1109 aa protein

accession:NP_001289178.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_001289178.1\|	collagen, type XXVIII, alpha 1b precursor [Danio rerio]	965	965	99%	0.0	53.88%	NP_001289178.1
2 Select seq ref\|XP_047276270.1\|	collagen alpha-1(XXVIII) chain isoform X5 [Homo sapiens]	410	701	95%	2e-128	44.70%	XP_047276270.1
3 Select seq ref\|XP_063138993.1\|	collagen alpha-1(XXIV) chain isoform X1 [Rattus norvegicus]	196	1166	45%	1e-49	40.06%	XP_063138993.1
4 Select seq ref\|XP_036011120.1\|	collagen alpha-4(VI) chain isoform X1 [Mus musculus]	180	817	66%	1e-44	35.28%	XP_036011120.1
5 Select seq ref\|NP_001334976.1\|	collagen, type XXVIII, alpha 1a precursor [Danio rerio]	911	911	98%	0.0	53.95%	NP_001334976.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments