Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_047300898.1
pre-mRNA-processing factor 40 homolog A isoform X3 [Homo sapiens]
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Query length:
976 aa
DOMAINS: and other(s) domains
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U1 snRNP-associated protein Prp40
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U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2
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pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B
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Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
Query: pre-mRNA-processing factor 40 homolog A isoform X3
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pre-mRNA-processing factor 40 homolog A isoform X3 [Homo sapiens]
976 aa protein
accession:XP_047300898.1
pre-mRNA-processing factor 40 homolog B isoform X9
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pre-mRNA-processing factor 40 homolog B isoform X9 [Rattus norvegicus]
889 aa protein
accession:XP_063120028.1
pre-mRNA-processing factor 40 homolog B isoform X10
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pre-mRNA-processing factor 40 homolog B isoform X10 [Mus musculus]
880 aa protein
accession:XP_036015417.1
DOMAINS: and other(s) domains
...
U1 snRNP-associated protein Prp40 [Schizosaccharomyces pombe]
695 aa protein
accession:NP_594966.1
pre-mRNA-processing protein 40A isoform X2 [Glycine max]
1008 aa protein
accession:XP_040869224.1
Pre-mRNA-processing factor 40 homolog B [Caenorhabditis elegans]
695 aa protein
accession:NP_001407496.1
pre-mRNA-processing factor 40 homolog A isoform X3 [Homo sapiens]
976 aa protein
accession:XP_047300898.1
pre-mRNA-processing factor 40 homolog B isoform X9 [Rattus norvegicus]
889 aa protein
accession:XP_063120028.1
pre-mRNA-processing factor 40 homolog B isoform X10 [Mus musculus]
880 aa protein
accession:XP_036015417.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 639 | 788 | 72% | 0.0 | 64.61% | XP_063120028.1 | |
| 2 | 614 | 764 | 60% | 0.0 | 72.47% | XP_036015417.1 | |
| 3 | 338 | 436 | 70% | 8e-103 | 43.39% | NP_001407496.1 | |
| 4 | 277 | 277 | 77% | 5e-78 | 30.48% | XP_040869224.1 | |
| 5 | 184 | 263 | 66% | 2e-47 | 26.07% | NP_594966.1 |