Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_054186563.1
major histocompatibility complex, class II, DR beta 4 isoform X4 [Homo sapiens]
...
Query length:
158 aa
DOMAINS: and other(s) domains
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major histocompatibility complex class II DAB precursor
...
major histocompatibility complex class II DAB precursor [Danio rerio]
250 aa protein
accession:NP_571551.3
rano class II histocompatibility antigen, D-1 beta chain isoform X1
...
rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
major histocompatibility complex, class II, DR beta 4 isoform X3
...
major histocompatibility complex, class II, DR beta 4 isoform X3 [Homo sapiens]
172 aa protein
accession:XP_054186562.1
major histocompatibility complex, class II, DR beta 4 isoform X1
...
major histocompatibility complex, class II, DR beta 4 isoform X1 [Homo sapiens]
266 aa protein
accession:XP_054186560.1
Query: major histocompatibility complex, class II, DR beta 4 isoform X4
...
major histocompatibility complex, class II, DR beta 4 isoform X4 [Homo sapiens]
158 aa protein
accession:XP_054186563.1
major histocompatibility complex, class II, DR beta 4 isoform X8
...
major histocompatibility complex, class II, DR beta 4 isoform X8 [Homo sapiens]
262 aa protein
accession:XP_054186791.1
DOMAINS: and other(s) domains
...
major histocompatibility complex class II DAB precursor [Danio rerio]
250 aa protein
accession:NP_571551.3
rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
major histocompatibility complex, class II, DR beta 4 isoform X3 [Homo sapiens]
172 aa protein
accession:XP_054186562.1
major histocompatibility complex, class II, DR beta 4 isoform X1 [Homo sapiens]
266 aa protein
accession:XP_054186560.1
major histocompatibility complex, class II, DR beta 4 isoform X4 [Homo sapiens]
158 aa protein
accession:XP_054186563.1
major histocompatibility complex, class II, DR beta 4 isoform X8 [Homo sapiens]
262 aa protein
accession:XP_054186791.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 266 | 266 | 84% | 7e-92 | 93.98% | XP_054186562.1 | |
| 2 | 149 | 149 | 81% | 2e-44 | 57.03% | XP_063135086.1 | |
| 3 | 42.7 | 42.7 | 39% | 2e-04 | 33.87% | NP_571551.3 | |
| 4 | 267 | 267 | 86% | 5e-91 | 93.43% | XP_054186560.1 | |
| 5 | 264 | 264 | 84% | 1e-89 | 94.78% | XP_054186791.1 |