Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
XP_063119235.1
mediator of RNA polymerase II transcription subunit 16 isoform X5 [Rattus norvegicus]
...
Query length:
870 aa
DOMAINS: and other(s) domains
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Sif2p
...
Sif2p [Saccharomyces cerevisiae S288C]
535 aa protein
accession:NP_009661.1
WD40 repeat-containing protein
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WD40 repeat-containing protein [Dictyostelium discoideum AX4]
342 aa protein
accession:XP_638901.1
mediator of RNA polymerase II transcription subunit 16
...
mediator of RNA polymerase II transcription subunit 16 [Danio rerio]
833 aa protein
accession:NP_001186801.1
mediator of RNA polymerase II transcription subunit 16
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mediator of RNA polymerase II transcription subunit 16 [Homo sapiens]
877 aa protein
accession:NP_005472.2
Query: mediator of RNA polymerase II transcription subunit 16 isoform X5
...
mediator of RNA polymerase II transcription subunit 16 isoform X5 [Rattus norvegicus]
870 aa protein
accession:XP_063119235.1
mediator of RNA polymerase II transcription subunit 16 isoform X1
...
mediator of RNA polymerase II transcription subunit 16 isoform X1 [Mus musculus]
829 aa protein
accession:XP_036011628.1
DOMAINS: and other(s) domains
...
Sif2p [Saccharomyces cerevisiae S288C]
535 aa protein
accession:NP_009661.1
WD40 repeat-containing protein [Dictyostelium discoideum AX4]
342 aa protein
accession:XP_638901.1
mediator of RNA polymerase II transcription subunit 16 [Danio rerio]
833 aa protein
accession:NP_001186801.1
mediator of RNA polymerase II transcription subunit 16 [Homo sapiens]
877 aa protein
accession:NP_005472.2
mediator of RNA polymerase II transcription subunit 16 isoform X5 [Rattus norvegicus]
870 aa protein
accession:XP_063119235.1
mediator of RNA polymerase II transcription subunit 16 isoform X1 [Mus musculus]
829 aa protein
accession:XP_036011628.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 1663 | 1663 | 95% | 0.0 | 98.32% | XP_036011628.1 | |
| 2 | 1509 | 1509 | 94% | 0.0 | 92.13% | NP_005472.2 | |
| 3 | 1314 | 1314 | 95% | 0.0 | 75.69% | NP_001186801.1 | |
| 4 | 38.1 | 38.1 | 15% | 0.19 | 20.86% | NP_009661.1 | |
| 5 | 36.6 | 36.6 | 3% | 0.46 | 35.29% | XP_638901.1 |