Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAC28432.1
MHC class II antigen [Rattus leucopus cooktownensis]
...
Query length:
82 aa
DOMAINS: and other(s) domains
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HLA class II histocompatibility antigen, DQ alpha 1 chain precursor
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HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]
255 aa protein
accession:NP_002113.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1 [Homo sapiens]
206 aa protein
accession:XP_006715142.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
Query: MHC class II antigen
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MHC class II antigen [Rattus leucopus cooktownensis]
82 aa protein
accession:AAC28432.1
histocompatibility 2, class II antigen A, alpha precursor
...
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
DOMAINS: and other(s) domains
...
HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]
255 aa protein
accession:NP_002113.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1 [Homo sapiens]
206 aa protein
accession:XP_006715142.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
MHC class II antigen [Rattus leucopus cooktownensis]
82 aa protein
accession:AAC28432.1
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 135 | 135 | 100% | 3e-40 | 75.61% | NP_034508.2 | |
| 2 | 119 | 119 | 100% | 1e-33 | 63.41% | NP_002113.2 | |
| 3 | 116 | 116 | 100% | 3e-33 | 63.41% | XP_006715142.1 | |
| 4 | 117 | 117 | 100% | 6e-33 | 62.20% | XP_054187296.1 | |
| 5 | 116 | 116 | 100% | 8e-33 | 62.20% | XP_054186783.1 |