Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAD39175.1
MHC class II RT1.Ba [Rattus leucopus cooktownensis]
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Query length:
82 aa
DOMAINS: and other(s) domains
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Query: MHC class II RT1.Ba
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MHC class II RT1.Ba [Rattus leucopus cooktownensis]
82 aa protein
accession:AAD39175.1
histocompatibility 2, class II antigen A, alpha precursor
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histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3 [Homo sapiens]
207 aa protein
accession:XP_054186264.1
HLA class II histocompatibility antigen, DQ alpha 2 chain precursor
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HLA class II histocompatibility antigen, DQ alpha 2 chain precursor [Homo sapiens]
255 aa protein
accession:NP_064440.1
DOMAINS: and other(s) domains
...
MHC class II RT1.Ba [Rattus leucopus cooktownensis]
82 aa protein
accession:AAD39175.1
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3 [Homo sapiens]
207 aa protein
accession:XP_054186264.1
HLA class II histocompatibility antigen, DQ alpha 2 chain precursor [Homo sapiens]
255 aa protein
accession:NP_064440.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 130 | 130 | 100% | 6e-38 | 70.73% | NP_034508.2 | |
| 2 | 120 | 120 | 100% | 2e-34 | 63.41% | XP_054186783.1 | |
| 3 | 120 | 120 | 100% | 2e-34 | 63.41% | XP_054187296.1 | |
| 4 | 118 | 118 | 100% | 6e-34 | 67.07% | XP_054186264.1 | |
| 5 | 119 | 119 | 100% | 1e-33 | 60.98% | NP_064440.1 |