Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AAL36873.1 rhodopsin [Aepypodius arfakianus] ... Query length: 16 aa

extra-ocular rhodopsin ...

extra-ocular rhodopsin [Danio rerio]

354 aa protein

accession:NP_571287.1

Alignment Sequence Identical proteins

Query: rhodopsin ...

rhodopsin [Aepypodius arfakianus]

16 aa protein

accession:AAL36873.1

Sequence Identical proteins

rhodopsin ...

rhodopsin [Mus musculus]

348 aa protein

accession:NP_663358.1

Alignment Sequence Identical proteins

rhodopsin isoform X1 ...

rhodopsin isoform X1 [Mus musculus]

344 aa protein

accession:XP_006505923.1

Alignment Sequence Identical proteins

rhodopsin isoform X3 ...

rhodopsin isoform X3 [Mus musculus]

310 aa protein

accession:XP_017176982.1

Alignment Sequence Identical proteins

rhodopsin ...

rhodopsin [Homo sapiens]

348 aa protein

accession:NP_000530.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_663358.1\|	rhodopsin [Mus musculus]	35.0	35.0	100%	0.002	100.00%	NP_663358.1
2 Select seq ref\|NP_000530.1\|	rhodopsin [Homo sapiens]	34.7	34.7	100%	0.003	100.00%	NP_000530.1
3 Select seq ref\|NP_571287.1\|	extra-ocular rhodopsin [Danio rerio]	33.5	33.5	100%	0.007	100.00%	NP_571287.1
4 Select seq ref\|XP_006505923.1\|	rhodopsin isoform X1 [Mus musculus]	34.7	34.7	100%	0.003	100.00%	XP_006505923.1
5 Select seq ref\|XP_017176982.1\|	rhodopsin isoform X3 [Mus musculus]	34.3	34.3	100%	0.004	100.00%	XP_017176982.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments