Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AAT69126.1 RNA polymerase II [Maripa glabra] ... Query length: 228 aa

RNA polymerase II core subunit ...

RNA polymerase II core subunit [Dictyostelium discoideum AX4]

1170 aa protein

accession:XP_636812.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II core subunit RPB2 ...

DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]

1224 aa protein

accession:NP_014794.3

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II complex subunit Rpb2 ...

DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]

1210 aa protein

accession:NP_593101.2

Alignment Sequence Identical proteins

Query: RNA polymerase II ...

RNA polymerase II [Maripa glabra]

228 aa protein

accession:AAT69126.1

Sequence Identical proteins

DNA-directed RNA polymerase family protein ...

DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

1188 aa protein

accession:NP_193902.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Glycine max]

1193 aa protein

accession:XP_003547482.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_003547482.1\|	DNA-directed RNA polymerase II subunit RPB2 [Glycine max]	467	467	100%	2e-156	97.81%	XP_003547482.1
2 Select seq ref\|NP_193902.1\|	DNA-directed RNA polymerase family protein [Arabidopsis thaliana]	461	461	100%	4e-154	95.61%	NP_193902.1
3 Select seq ref\|XP_636812.1\|	RNA polymerase II core subunit [Dictyostelium discoideum AX4]	352	352	99%	1e-112	71.93%	XP_636812.1
4 Select seq ref\|NP_014794.3\|	DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]	352	352	100%	1e-112	72.61%	NP_014794.3
5 Select seq ref\|NP_593101.2\|	DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]	335	335	100%	2e-106	68.70%	NP_593101.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments