Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AEY77846.1 RNA polymerase alpha subunit [Vibrio sp. AmSamDD45] ... Query length: 143 aa

DNA-directed RNA polymerase subunit alpha ...

DNA-directed RNA polymerase subunit alpha [Bacillus]

314 aa protein

accession:WP_003225835.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit alpha ...

DNA-directed RNA polymerase subunit alpha [Pseudomonas]

333 aa protein

accession:WP_003093675.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit alpha ...

DNA-directed RNA polymerase subunit alpha [Pseudomonadota]

328 aa protein

accession:WP_002215457.1

Alignment Sequence Identical proteins

Query: RNA polymerase alpha subunit ...

RNA polymerase alpha subunit [Vibrio sp. AmSamDD45]

143 aa protein

accession:AEY77846.1

Sequence Identical proteins

DNA-directed RNA polymerase subunit alpha ...

DNA-directed RNA polymerase subunit alpha [Shewanella]

329 aa protein

accession:WP_011070632.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit alpha ...

DNA-directed RNA polymerase subunit alpha [Bacteria]

329 aa protein

accession:WP_001162094.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_001162094.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Bacteria]	258	258	100%	2e-86	88.11%	WP_001162094.1
2 Select seq ref\|WP_011070632.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Shewanella]	240	240	100%	4e-79	81.82%	WP_011070632.1
3 Select seq ref\|WP_003093675.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Pseudomonas]	188	188	99%	9e-59	67.61%	WP_003093675.1
4 Select seq ref\|WP_002215457.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Pseudomonadota]	165	165	94%	1e-49	63.43%	WP_002215457.1
5 Select seq ref\|WP_003225835.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Bacillus]	143	143	99%	2e-41	52.48%	WP_003225835.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments