Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AIB50772.1 RNA polymerase II second largest subunit [Bonnaya antipoda] ... Query length: 105 aa

DNA-directed RNA polymerase II subunit RPB2 isoform 3 ...

DNA-directed RNA polymerase II subunit RPB2 isoform 3 [Homo sapiens]

1167 aa protein

accession:NP_001290198.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]

1174 aa protein

accession:NP_722493.2

Alignment Sequence Identical proteins

RNA polymerase II core subunit ...

RNA polymerase II core subunit [Dictyostelium discoideum AX4]

1170 aa protein

accession:XP_636812.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase family protein ...

DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

1188 aa protein

accession:NP_193902.1

Alignment Sequence Identical proteins

Query: RNA polymerase II second largest subunit ...

RNA polymerase II second largest subunit [Bonnaya antipoda]

105 aa protein

accession:AIB50772.1

Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Glycine max]

1192 aa protein

accession:XP_003533774.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_193902.1\|	DNA-directed RNA polymerase family protein [Arabidopsis thaliana]	218	218	100%	5e-66	99.05%	NP_193902.1
2 Select seq ref\|XP_003533774.1\|	DNA-directed RNA polymerase II subunit RPB2 [Glycine max]	218	218	100%	6e-66	99.05%	XP_003533774.1
3 Select seq ref\|XP_636812.1\|	RNA polymerase II core subunit [Dictyostelium discoideum AX4]	169	169	100%	7e-49	72.38%	XP_636812.1
4 Select seq ref\|NP_001290198.1\|	DNA-directed RNA polymerase II subunit RPB2 isoform 3 [Homo sapiens]	156	156	100%	2e-44	70.75%	NP_001290198.1
5 Select seq ref\|NP_722493.2\|	DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]	156	156	100%	2e-44	70.75%	NP_722493.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments