Smart BLAST

Report description

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: ALI91189.1 RpoC2 [Phytocrene borneensis] ... Query length: 1351 aa

Query: RpoC2 ...

RpoC2 [Phytocrene borneensis]

1351 aa protein

accession:ALI91189.1

Sequence Identical proteins

RNA polymerase beta'' subunit ...

RNA polymerase beta'' subunit [Arabidopsis thaliana]

1376 aa protein

accession:NP_051049.1

Alignment Sequence Identical proteins

RNA polymerase beta'' subunit ...

RNA polymerase beta'' subunit [Glycine max]

1386 aa protein

accession:YP_538765.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta'' ...

DNA-directed RNA polymerase subunit beta'' [Synechocystis salina]

1317 aa protein

accession:WP_194019160.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Microcystis aeruginosa]

1334 aa protein

accession:WP_061430916.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Streptomyces]

1299 aa protein

accession:WP_003974308.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_051049.1\|	RNA polymerase beta'' subunit [Arabidopsis thaliana]	502	1185	57%	3e-153	73.18%	NP_051049.1
2 Select seq ref\|YP_538765.1\|	RNA polymerase beta'' subunit [Glycine max]	490	1120	56%	1e-148	71.26%	YP_538765.1
3 Select seq ref\|WP_194019160.1\|	DNA-directed RNA polymerase subunit beta'' [Synechocystis salina]	236	377	34%	1e-61	38.58%	WP_194019160.1
4 Select seq ref\|WP_061430916.1\|	DNA-directed RNA polymerase subunit beta' [Microcystis aeruginosa]	235	377	35%	2e-61	38.21%	WP_061430916.1
5 Select seq ref\|WP_003974308.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Streptomyces]	186	300	40%	3e-46	33.14%	WP_003974308.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments