Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AVA30618.1 PsbC [Halocnemum strobilaceum] ... Query length: 105 aa

photosystem II 47 kDa protein ...

photosystem II 47 kDa protein [Arabidopsis thaliana]

508 aa protein

accession:NP_051084.1

Alignment Sequence Identical proteins

photosystem II reaction center protein CP43 ...

photosystem II reaction center protein CP43 [Synechocystis]

460 aa protein

accession:WP_014407100.1

Alignment Sequence Identical proteins

photosystem II reaction center protein CP43 ...

photosystem II reaction center protein CP43 [Microcystis]

460 aa protein

accession:WP_061433070.1

Alignment Sequence Identical proteins

Query: PsbC ...

PsbC [Halocnemum strobilaceum]

105 aa protein

accession:AVA30618.1

Sequence Identical proteins

photosystem II 44 kDa protein ...

photosystem II 44 kDa protein [Glycine max]

473 aa protein

accession:YP_538759.1

Alignment Sequence Identical proteins

photosystem II 44 kDa protein ...

photosystem II 44 kDa protein [Arabidopsis thaliana]

473 aa protein

accession:NP_051055.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|YP_538759.1\|	photosystem II 44 kDa protein [Glycine max]	218	218	100%	2e-69	100.00%	YP_538759.1
2 Select seq ref\|NP_051055.1\|	photosystem II 44 kDa protein [Arabidopsis thaliana]	216	216	100%	6e-69	99.05%	NP_051055.1
3 Select seq ref\|WP_014407100.1\|	MULTISPECIES: photosystem II reaction center protein CP43 [Synechocystis]	174	174	100%	9e-53	84.76%	WP_014407100.1
4 Select seq ref\|WP_061433070.1\|	MULTISPECIES: photosystem II reaction center protein CP43 [Microcystis]	169	169	100%	7e-51	80.00%	WP_061433070.1
5 Select seq ref\|NP_051084.1\|	photosystem II 47 kDa protein [Arabidopsis thaliana]	37.0	37.0	64%	0.022	28.99%	NP_051084.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments