Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: C0HLI1.1 RecName: Full=Collagen alpha-1(I) chain; AltName: Full=Alpha-1 type I collagen [Doedicurus sp.] ... Query length: 1021 aa

collagen type IV alpha 1, isoform A ...

collagen type IV alpha 1, isoform A [Drosophila melanogaster]

1779 aa protein

accession:NP_723044.1

Alignment Sequence Identical proteins

Collagen alpha-1(IV) chain ...

Collagen alpha-1(IV) chain [Caenorhabditis elegans]

1502 aa protein

accession:NP_001022663.1

Alignment Sequence Identical proteins

collagen alpha-2(I) chain preproprotein ...

collagen alpha-2(I) chain preproprotein [Mus musculus]

1372 aa protein

accession:NP_031769.2

Alignment Sequence Identical proteins

collagen, type I, alpha 1a precursor ...

collagen, type I, alpha 1a precursor [Danio rerio]

1447 aa protein

accession:NP_954684.1

Alignment Sequence Identical proteins

Query: RecName: Full=Collagen alpha-1(I) chain; AltName: Full=Alpha-1 type I collagen ...

RecName: Full=Collagen alpha-1(I) chain; AltName: Full=Alpha-1 type I collagen [Doedicurus sp.]

1021 aa protein

accession:C0HLI1.1

Sequence Identical proteins

collagen alpha-1(I) chain preproprotein ...

collagen alpha-1(I) chain preproprotein [Homo sapiens]

1464 aa protein

accession:NP_000079.2

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_000079.2\|	collagen alpha-1(I) chain preproprotein [Homo sapiens]	1587	1587	100%	0.0	96.98%	NP_000079.2
2 Select seq ref\|NP_954684.1\|	collagen, type I, alpha 1a precursor [Danio rerio]	748	1017	99%	0.0	78.46%	NP_954684.1
3 Select seq ref\|NP_031769.2\|	collagen alpha-2(I) chain preproprotein [Mus musculus]	742	1836	99%	0.0	65.41%	NP_031769.2
4 Select seq ref\|NP_723044.1\|	collagen type IV alpha 1, isoform A [Drosophila melanogaster]	372	2834	99%	1e-107	39.43%	NP_723044.1
5 Select seq ref\|NP_001022663.1\|	Collagen alpha-1(IV) chain [Caenorhabditis elegans]	330	1377	99%	8e-94	40.31%	NP_001022663.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments