Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
CAA06018.1
MHC class II RT1D beta1 chain antigen [Rattus norvegicus]
...
Query length:
115 aa
DOMAINS: and other(s) domains
...
H-2 class II histocompatibility antigen, E-S beta chain
...
H-2 class II histocompatibility antigen, E-S beta chain [Danio rerio]
250 aa protein
accession:XP_005167291.1
H-2 class II histocompatibility antigen, I-E beta chain precursor
...
H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]
264 aa protein
accession:NP_034512.2
major histocompatibility complex, class II, DR beta 5 precursor
...
major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens]
266 aa protein
accession:NP_002116.2
major histocompatibility complex, class II, DR beta 5 isoform X1
...
major histocompatibility complex, class II, DR beta 5 isoform X1 [Homo sapiens]
276 aa protein
accession:XP_011512864.1
Query: MHC class II RT1D beta1 chain antigen
...
MHC class II RT1D beta1 chain antigen [Rattus norvegicus]
115 aa protein
accession:CAA06018.1
major histocompatibility complex, class II, DR beta 1 precursor
...
major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]
266 aa protein
accession:NP_002115.2
DOMAINS: and other(s) domains
...
H-2 class II histocompatibility antigen, E-S beta chain [Danio rerio]
250 aa protein
accession:XP_005167291.1
H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]
264 aa protein
accession:NP_034512.2
major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens]
266 aa protein
accession:NP_002116.2
major histocompatibility complex, class II, DR beta 5 isoform X1 [Homo sapiens]
276 aa protein
accession:XP_011512864.1
MHC class II RT1D beta1 chain antigen [Rattus norvegicus]
115 aa protein
accession:CAA06018.1
major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]
266 aa protein
accession:NP_002115.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 178 | 178 | 100% | 4e-56 | 72.88% | NP_002115.2 | |
| 2 | 164 | 164 | 100% | 7e-51 | 70.34% | NP_034512.2 | |
| 3 | 42.7 | 42.7 | 49% | 2e-04 | 29.82% | XP_005167291.1 | |
| 4 | 169 | 169 | 100% | 1e-52 | 70.34% | NP_002116.2 | |
| 5 | 169 | 169 | 100% | 1e-52 | 70.34% | XP_011512864.1 |