Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: NP_001020741.1 paired mesoderm homeobox protein 1 isoform c [Mus musculus] ... Query length: 200 aa

Homeobox ARX homolog alr-1 ...

Homeobox ARX homolog alr-1 [Caenorhabditis elegans]

362 aa protein

accession:NP_509860.1

Alignment Sequence Identical proteins

uncharacterized protein Dmel_CG9876 ...

uncharacterized protein Dmel_CG9876 [Drosophila melanogaster]

275 aa protein

accession:NP_611756.1

Alignment Sequence Identical proteins

Query: paired mesoderm homeobox protein 1 isoform c ...

paired mesoderm homeobox protein 1 isoform c [Mus musculus]

200 aa protein

accession:NP_001020741.1

Sequence Identical proteins

paired mesoderm homeobox protein 1 isoform a ...

paired mesoderm homeobox protein 1 isoform a [Mus musculus]

245 aa protein

accession:NP_035257.1

Alignment Sequence Identical proteins

paired mesoderm homeobox protein 1 isoform pmx-1b ...

paired mesoderm homeobox protein 1 isoform pmx-1b [Homo sapiens]

245 aa protein

accession:NP_073207.1

Alignment Sequence Identical proteins

paired mesoderm homeobox protein 1b ...

paired mesoderm homeobox protein 1b [Danio rerio]

245 aa protein

accession:NP_956344.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_035257.1\|	paired mesoderm homeobox protein 1 isoform a [Mus musculus]	412	412	99%	3e-147	100.00%	NP_035257.1
2 Select seq ref\|NP_073207.1\|	paired mesoderm homeobox protein 1 isoform pmx-1b [Homo sapiens]	410	410	99%	9e-147	99.50%	NP_073207.1
3 Select seq ref\|NP_956344.1\|	paired mesoderm homeobox protein 1b [Danio rerio]	337	337	99%	8e-118	85.57%	NP_956344.1
4 Select seq ref\|NP_611756.1\|	uncharacterized protein Dmel_CG9876 [Drosophila melanogaster]	124	124	77%	1e-33	46.88%	NP_611756.1
5 Select seq ref\|NP_509860.1\|	Homeobox ARX homolog alr-1 [Caenorhabditis elegans]	105	105	34%	5e-26	69.57%	NP_509860.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments