Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
P27958.3
RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate H77)]
...
Query length:
3011 aa
DOMAINS: and other(s) domains
...
Query: RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68
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RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate H77)]
3011 aa protein
accession:P27958.3
ATP-dependent RNA helicase DbpA
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ATP-dependent RNA helicase DbpA [Pseudomonas]
458 aa protein
accession:WP_003113273.1
DEAD/DEAH box helicase
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DEAD/DEAH box helicase [Clostridioides difficile]
537 aa protein
accession:WP_003437464.1
DOMAINS: and other(s) domains
...
RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate H77)]
3011 aa protein
accession:P27958.3
ATP-dependent RNA helicase DbpA [Pseudomonas]
458 aa protein
accession:WP_003113273.1
DEAD/DEAH box helicase [Clostridioides difficile]
537 aa protein
accession:WP_003437464.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 41.2 | 41.2 | 4% | 0.18 | 25.18% | WP_003113273.1 | |
| 2 | 40.8 | 40.8 | 3% | 0.25 | 28.95% | WP_003437464.1 |