Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
PJA23189.1
beta-CASP ribonuclease aCPSF1 [archaeon CG_4_10_14_0_2_um_filter_Archaea_38_6]
...
Query length:
555 aa
DOMAINS: and other(s) domains
...
cleavage and polyadenylation specificity factor subunit 3
...
cleavage and polyadenylation specificity factor subunit 3 [Danio rerio]
690 aa protein
accession:NP_001003836.1
cleavage and polyadenylation specificity factor subunit 3 isoform 3
...
cleavage and polyadenylation specificity factor subunit 3 isoform 3 [Mus musculus]
512 aa protein
accession:NP_001351302.1
cleavage and polyadenylation specificity factor subunit 3 isoform X1
...
cleavage and polyadenylation specificity factor subunit 3 isoform X1 [Homo sapiens]
674 aa protein
accession:XP_047300701.1
beta-CASP ribonuclease aCPSF1
...
beta-CASP ribonuclease aCPSF1 [Sulfolobus acidocaldarius]
631 aa protein
accession:WP_011277529.1
Query: beta-CASP ribonuclease aCPSF1
...
beta-CASP ribonuclease aCPSF1 [archaeon CG_4_10_14_0_2_um_filter_Archaea_38_6]
555 aa protein
accession:PJA23189.1
beta-CASP ribonuclease aCPSF1
...
beta-CASP ribonuclease aCPSF1 [Methanothermobacter]
636 aa protein
accession:WP_010876827.1
DOMAINS: and other(s) domains
...
cleavage and polyadenylation specificity factor subunit 3 [Danio rerio]
690 aa protein
accession:NP_001003836.1
cleavage and polyadenylation specificity factor subunit 3 isoform 3 [Mus musculus]
512 aa protein
accession:NP_001351302.1
cleavage and polyadenylation specificity factor subunit 3 isoform X1 [Homo sapiens]
674 aa protein
accession:XP_047300701.1
beta-CASP ribonuclease aCPSF1 [Sulfolobus acidocaldarius]
631 aa protein
accession:WP_011277529.1
beta-CASP ribonuclease aCPSF1 [archaeon CG_4_10_14_0_2_um_filter_Archaea_38_6]
555 aa protein
accession:PJA23189.1
beta-CASP ribonuclease aCPSF1 [Methanothermobacter]
636 aa protein
accession:WP_010876827.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 609 | 609 | 99% | 0.0 | 51.26% | WP_010876827.1 | |
| 2 | 494 | 494 | 99% | 5e-168 | 43.72% | WP_011277529.1 | |
| 3 | 221 | 221 | 81% | 2e-62 | 31.52% | NP_001003836.1 | |
| 4 | 216 | 216 | 81% | 5e-62 | 31.30% | NP_001351302.1 | |
| 5 | 216 | 216 | 81% | 5e-61 | 31.24% | XP_047300701.1 |