Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_595673.1\|	RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]	142	142	99%	1e-38	50.65%	NP_595673.1
2 Select seq ref\|NP_010141.1\|	DNA-directed RNA polymerase II core subunit RPO21 [Saccharomyces cerevisiae S288C]	130	130	98%	2e-34	45.75%	NP_010141.1
3 Select seq ref\|NP_000928.1\|	DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]	122	122	98%	1e-31	42.59%	NP_000928.1
4 Select seq ref\|NP_001277997.1\|	DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]	122	122	98%	1e-31	42.59%	NP_001277997.1
5 Select seq ref\|XP_040861151.1\|	DNA-directed RNA polymerase II subunit RPB1-like [Glycine max]	117	117	99%	5e-30	38.61%	XP_040861151.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments