Smart BLAST

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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: YP_009555720.1 RNA polymerase subunit beta'' [Selaginella kraussiana] ... Query length: 1400 aa

Query: RNA polymerase subunit beta'' ...

RNA polymerase subunit beta'' [Selaginella kraussiana]

1400 aa protein

accession:YP_009555720.1

Sequence Identical proteins

RNA polymerase beta'' subunit ...

RNA polymerase beta'' subunit [Arabidopsis thaliana]

1376 aa protein

accession:NP_051049.1

Alignment Sequence Identical proteins

RNA polymerase beta'' subunit ...

RNA polymerase beta'' subunit [Glycine max]

1386 aa protein

accession:YP_538765.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta'' ...

DNA-directed RNA polymerase subunit beta'' [Synechocystis salina]

1317 aa protein

accession:WP_194019160.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Microcystis aeruginosa]

1334 aa protein

accession:WP_061430916.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Bacillus]

1199 aa protein

accession:WP_004399688.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Descriptions

Best hits

Select:All None Selected:0

Best hits producing significant alignments
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_051049.1\|	RNA polymerase beta'' subunit [Arabidopsis thaliana]	572	806	55%	1e-178	58.10%	NP_051049.1
2 Select seq ref\|YP_538765.1\|	RNA polymerase beta'' subunit [Glycine max]	564	807	56%	1e-175	56.84%	YP_538765.1
3 Select seq ref\|WP_194019160.1\|	DNA-directed RNA polymerase subunit beta'' [Synechocystis salina]	363	518	50%	3e-103	42.98%	WP_194019160.1
4 Select seq ref\|WP_061430916.1\|	DNA-directed RNA polymerase subunit beta' [Microcystis aeruginosa]	361	509	50%	2e-102	42.02%	WP_061430916.1
5 Select seq ref\|WP_004399688.1\|	MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Bacillus]	255	351	38%	6e-68	35.80%	WP_004399688.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments